Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 6 lcl|NC_015720.1_cdsid_YP_004678776.1 HHsearch (proba=100.00%)
Portal 3 lcl|NC_015720.1_cdsid_YP_004678773.1 HHsearch (proba=100.00%)
TermL 2 lcl|NC_015720.1_cdsid_YP_004678772.1 Blast (e-value=1e-136)
MTP 11 lcl|NC_015720.1_cdsid_YP_004678781.1 Blast (e-value=1e-23)
Sheath NOT FOUND
Ad1 7 lcl|NC_015720.1_cdsid_YP_004678777.1 HHsearch (proba=100.00%)
Hc1 8 lcl|NC_015720.1_cdsid_YP_004678778.1 HHsearch (proba=100.00%)
Ne1 9 lcl|NC_015720.1_cdsid_YP_004678779.1 HHsearch (proba=100.00%)
Tc1 10 lcl|NC_015720.1_cdsid_YP_004678780.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:8187
protein:vir:78223
protein:vir:99920
Che9d
Bethlehem
Halo
33 %
29 %
29 %
Portal protein:vir:80680
protein:vir:78537
protein:vir:78227
PA6
U2
Bethlehem
36 %
29 %
29 %
TermL protein:vir:98470
protein:vir:2426
protein:vir:78494
VWB
D29
U2
45 %
32 %
32 %
MTP protein:vir:9580
protein:vir:1644
protein:vir:94739
SM1
r1t
phi LC3
35 %
35 %
34 %
Ad1 protein:vir:99922
protein:vir:8189
protein:vir:80668
Halo
Che9d
PA6
41 %
36 %
33 %
Hc1 protein:vir:8190
protein:vir:2506
protein:vir:99923
Che9d
TM4
Halo
33 %
23 %
22 %
Ne1 protein:vir:8192
protein:vir:94763
protein:vir:1642
Che9d
phi LC3
r1t
36 %
32 %
32 %
Tc1 protein:vir:8193
protein:vir:98426
protein:vir:9764
Che9d
VWB
315.3
30 %
22 %
23 %