Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 9 lcl|NC_015254.1_cdsid_YP_004301541.1 HHsearch (proba=100.00%)
Portal 4 lcl|NC_015254.1_cdsid_YP_004301536.1 HHsearch (proba=100.00%)
TermL 2 lcl|NC_015254.1_cdsid_YP_004301534.1 Blast (e-value=1e-130)
MTP 16 lcl|NC_015254.1_cdsid_YP_004301548.1 Blast (e-value=3e-26)
Sheath NOT FOUND
Ad1 10 lcl|NC_015254.1_cdsid_YP_004301542.1 HHsearch (proba=100.00%)
Hc1 11 lcl|NC_015254.1_cdsid_YP_004301543.1 HHsearch (proba=100.00%)
Ne1 12 lcl|NC_015254.1_cdsid_YP_004301544.1 HHsearch (proba=100.00%)
Tc1 13 lcl|NC_015254.1_cdsid_YP_004301545.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:5974
protein:vir:102944
protein:vir:78387
SPP1
EJ-1
SETP3
50 %
41 %
31 %
Portal protein:vir:106571
protein:vir:106639
protein:vir:99781
Lj965
187
phiETA2
44 %
31 %
29 %
TermL protein:vir:5954
protein:vir:105297
protein:vir:107098
SPP1
PH15
CNPH82
57 %
54 %
54 %
MTP protein:vir:106581
protein:vir:100083
protein:vir:100241
Lj965
phi1026b
Bcep176
39 %
23 %
23 %
Ad1 protein:vir:106583
protein:vir:99517
protein:vir:95774
Lj965
Lj928
SMP
32 %
30 %
30 %
Hc1 protein:vir:106552
protein:vir:93599
protein:vir:95261
Lj965
phi 4795
Felix 01
53 %
6 %
21 %
Ne1 protein:vir:106570
protein:vir:5978
protein:vir:105330
Lj965
SPP1
PH15
44 %
26 %
26 %
Tc1 protein:vir:106554
protein:vir:102086
protein:vir:102888
Lj965
Fah
Cherry
30 %
18 %
18 %