Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 39 lcl|NC_015159.1_cdsid_YP_004251282.1 HHsearch (proba=100.00%)
Portal 37 lcl|NC_015159.1_cdsid_YP_004251280.1 HHsearch (proba=100.00%)
TermL 53 lcl|NC_015159.1_cdsid_YP_004251296.1 Blast (e-value=0)
MTP NOT FOUND
Sheath NOT FOUND
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 NOT FOUND
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 40 lcl|NC_015159.1_cdsid_YP_004251283.1 HHsearch (proba=100.00%)
Hc3 41 lcl|NC_015159.1_cdsid_YP_004251284.1 HHsearch (proba=100.00%)
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:99675
protein:vir:1541
protein:vir:3364
VP4
phiYeO3-12
T3
97 %
67 %
65 %
Portal protein:vir:99672
protein:vir:94572
protein:vir:3361
VP4
Berlin
T3
100 %
60 %
60 %
TermL protein:vir:99686
protein:vir:94726
protein:vir:8897
VP4
K1F
gh-1
99 %
70 %
69 %
Ad3 protein:vir:99676
protein:vir:3365
protein:vir:1542
VP4
T3
phiYeO3-12
98 %
62 %
62 %
Hc3 protein:vir:99677
protein:vir:94583
protein:vir:10452
VP4
Berlin
phiA1122
98 %
54 %
53 %