Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 7 lcl|NC_012788.1_cdsid_YP_002941865.1 HHsearch (proba=100.00%)
Portal 3 lcl|NC_012788.1_cdsid_YP_002941861.1 HHsearch (proba=100.00%)
TermL 2 lcl|NC_012788.1_cdsid_YP_002941860.1 Blast (e-value=0)
MTP 13 lcl|NC_012788.1_cdsid_YP_002941871.1 Blast (e-value=1e-116)
Sheath NOT FOUND
Ad1 9 lcl|NC_012788.1_cdsid_YP_002941867.1 HHsearch (proba=100.00%)
Hc1 10 lcl|NC_012788.1_cdsid_YP_002941868.1 HHsearch (proba=100.00%)
Ne1 11 lcl|NC_012788.1_cdsid_YP_002941869.1 HHsearch (proba=100.00%)
Tc1 12 lcl|NC_012788.1_cdsid_YP_002941870.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:99920
protein:vir:8187
protein:vir:80684
Halo
Che9d
PA6
97 %
45 %
34 %
Portal protein:vir:99916
protein:vir:8184
protein:vir:80680
Halo
Che9d
PA6
98 %
51 %
25 %
TermL protein:vir:99915
protein:vir:2499
protein:vir:8315
Halo
TM4
Corndog
100 %
58 %
35 %
MTP protein:vir:99926
protein:vir:2509
protein:vir:9765
Halo
TM4
315.3
99 %
61 %
27 %
Ad1 protein:vir:99922
protein:vir:8189
protein:vir:80668
Halo
Che9d
PA6
96 %
43 %
43 %
Hc1 protein:vir:99923
protein:vir:2506
protein:vir:8190
Halo
TM4
Che9d
98 %
45 %
26 %
Ne1 protein:vir:99924
protein:vir:2507
protein:vir:9763
Halo
TM4
315.3
95 %
35 %
26 %
Tc1 protein:vir:99925
protein:vir:2508
protein:vir:98426
Halo
TM4
VWB
98 %
40 %
21 %