Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster. ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 50 lcl|NC_012743.2_cdsid_YP_002922722.1 HHsearch (proba=100.00%)
Portal 46 lcl|NC_012743.2_cdsid_YP_002922718.1 HHsearch (proba=100.00%)
TermL 44 lcl|NC_012743.2_cdsid_YP_002922716.1 Blast (e-value=0)
MTP NOT FOUND
Sheath NOT FOUND
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 NOT FOUND
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 53 lcl|NC_012743.2_cdsid_YP_002922725.1 HHsearch (proba=100.00%)
Hc3 63 lcl|NC_012743.2_cdsid_YP_002922735.1 HHsearch (proba=100.00%)
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.



Proteins Superfamilies Observed Intergene Distance Expected Intergene Distance
Ad3<->Hc3 10 2


Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:93696
protein:vir:104439
protein:vir:10123
Bcep22
86
Stx2 converting bacteriophage II
93 %
34 %
34 %
Portal protein:vir:93630
protein:vir:105619
protein:vir:104437
Bcep22
F116
86
91 %
25 %
25 %
TermL protein:vir:93626
protein:vir:105593
protein:vir:104436
Bcep22
F116
86
92 %
56 %
30 %
Ad3 protein:vir:93692
protein:vir:5111
protein:vir:3302
Bcep22
PBC5
933W
77 %
33 %
30 %
Hc3 protein:vir:93631
protein:vir:5120
protein:vir:104388
Bcep22
PBC5
86
92 %
48 %
30 %