Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 5 lcl|NC_011976.1_cdsid_YP_002533464.1 HHsearch (proba=100.00%)
Portal 3 lcl|NC_011976.1_cdsid_YP_002533462.1 HHsearch (proba=100.00%)
TermL 2 lcl|NC_011976.1_cdsid_YP_002533461.1 Blast (e-value=0)
MTP NOT FOUND
Sheath NOT FOUND
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 NOT FOUND
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 7 lcl|NC_011976.1_cdsid_YP_002533466.1 HHsearch (proba=100.00%)
Hc3 8 lcl|NC_011976.1_cdsid_YP_002533467.1 HHsearch (proba=100.00%)
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:100939
protein:vir:9265
protein:vir:2106
ST104
ST64T
P22
99 %
99 %
98 %
Portal protein:vir:100920
protein:vir:9263
protein:vir:77597
ST104
ST64T
P22
99 %
99 %
98 %
TermL protein:vir:100942
protein:vir:9262
protein:vir:77595
ST104
ST64T
P22
99 %
99 %
99 %
Ad3 protein:vir:9267
protein:vir:2108
protein:vir:100918
ST64T
P22
ST104
98 %
97 %
96 %
Hc3 protein:vir:9268
protein:vir:100960
protein:vir:2109
ST64T
ST104
P22
100 %
98 %
96 %