Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 38 lcl|NC_011107.1_cdsid_YP_002117817.1 HHsearch (proba=100.00%)
Portal 36 lcl|NC_011107.1_cdsid_YP_002117815.1 HHsearch (proba=100.00%)
TermL 49 lcl|NC_011107.1_cdsid_YP_002117828.1 Blast (e-value=0)
MTP NOT FOUND
Sheath NOT FOUND
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 NOT FOUND
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 39 lcl|NC_011107.1_cdsid_YP_002117818.1 HHsearch (proba=100.00%)
Hc3 40 lcl|NC_011107.1_cdsid_YP_002117819.1 HHsearch (proba=100.00%)
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:6324
protein:vir:78935
protein:vir:80213
phiKMV
LKD16
LKA1
100 %
97 %
51 %
Portal protein:vir:6322
protein:vir:78942
protein:vir:80211
phiKMV
LKD16
LKA1
99 %
97 %
46 %
TermL protein:vir:6335
protein:vir:78939
protein:vir:80218
phiKMV
LKD16
LKA1
100 %
97 %
60 %
Ad3 protein:vir:6325
protein:vir:78929
protein:vir:80215
phiKMV
LKD16
LKA1
100 %
96 %
40 %
Hc3 protein:vir:6326
protein:vir:78957
protein:vir:80253
phiKMV
LKD16
LKA1
100 %
94 %
39 %