Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 6 lcl|NC_011104.1_cdsid_YP_002117674.1 HHsearch (proba=100.00%)
Portal 4 lcl|NC_011104.1_cdsid_YP_002117672.1 HHsearch (proba=100.00%)
TermL 2 lcl|NC_011104.1_cdsid_YP_002117670.1 Blast (e-value=0)
MTP 11 lcl|NC_011104.1_cdsid_YP_002117679.1 Blast (e-value=1e-107)
Sheath NOT FOUND
Ad1 7 lcl|NC_011104.1_cdsid_YP_002117675.1 HHsearch (proba=100.00%)
Hc1 8 lcl|NC_011104.1_cdsid_YP_002117676.1 HHsearch (proba=100.00%)
Ne1 9 lcl|NC_011104.1_cdsid_YP_002117677.1 HHsearch (proba=100.00%)
Tc1 10 lcl|NC_011104.1_cdsid_YP_002117678.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:3870
protein:vir:9704
protein:vir:100172
A2
315.2
phi AT3
94 %
43 %
39 %
Portal protein:vir:3868
protein:vir:9702
protein:vir:81095
A2
315.2
tp310-1
92 %
53 %
27 %
TermL protein:vir:3867
protein:vir:9699
protein:vir:81099
A2
315.2
tp310-1
96 %
50 %
34 %
MTP protein:vir:3875
protein:vir:9710
protein:vir:1275
A2
315.2
phi-105
93 %
45 %
26 %
Ad1 protein:vir:3871
protein:vir:9706
protein:vir:1384
A2
315.2
phi3626
81 %
38 %
25 %
Hc1 protein:vir:3872
protein:vir:1890
protein:vir:4343
A2
HK022
D3
95 %
23 %
21 %
Ne1 protein:vir:3873
protein:vir:9708
protein:vir:81106
A2
315.2
tp310-1
99 %
40 %
28 %
Tc1 protein:vir:3874
protein:vir:9709
protein:vir:78648
A2
315.2
tp310-2
91 %
30 %
20 %