Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster. ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 35 lcl|NC_011043.1_cdsid_YP_002003823.1 HHsearch (proba=100.00%)
Portal 33 lcl|NC_011043.1_cdsid_YP_002003821.1 HHsearch (proba=100.00%)
TermL 48 lcl|NC_011043.1_cdsid_YP_002003836.1 Blast (e-value=0)
MTP NOT FOUND
Sheath NOT FOUND
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 NOT FOUND
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 36 lcl|NC_011043.1_cdsid_YP_002003824.1 HHsearch (proba=100.00%)
Hc3 37 lcl|NC_011043.1_cdsid_YP_002003825.1 HHsearch (proba=100.00%)
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:1541
protein:vir:3364
protein:vir:94576
phiYeO3-12
T3
Berlin
84 %
82 %
80 %
Portal protein:vir:10447
protein:vir:2198
protein:vir:3361
phiA1122
T7
T3
81 %
81 %
79 %
TermL protein:vir:3376
protein:vir:1554
protein:vir:10462
T3
phiYeO3-12
phiA1122
83 %
83 %
80 %
Ad3 protein:vir:10451
protein:vir:2202
protein:vir:3365
phiA1122
T7
T3
61 %
61 %
60 %
Hc3 protein:vir:1543
protein:vir:3366
protein:vir:2203
phiYeO3-12
T3
T7
63 %
62 %
62 %