Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 31 lcl|NC_011038.1_cdsid_YP_002003343.1 HHsearch (proba=100.00%)
Portal 29 lcl|NC_011038.1_cdsid_YP_002003341.1 HHsearch (proba=100.00%)
TermL 45 lcl|NC_011038.1_cdsid_YP_002003357.1 Blast (e-value=0)
MTP NOT FOUND
Sheath NOT FOUND
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 NOT FOUND
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 33 lcl|NC_011038.1_cdsid_YP_002003345.1 HHsearch (proba=100.00%)
Hc3 34 lcl|NC_011038.1_cdsid_YP_002003346.1 HHsearch (proba=100.00%)
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:94576
protein:vir:3364
protein:vir:1541
Berlin
T3
phiYeO3-12
100 %
79 %
79 %
Portal protein:vir:94572
protein:vir:3361
protein:vir:1538
Berlin
T3
phiYeO3-12
100 %
82 %
82 %
TermL protein:vir:94555
protein:vir:10462
protein:vir:3376
Berlin
phiA1122
T3
99 %
80 %
80 %
Ad3 protein:vir:94565
protein:vir:3365
protein:vir:1542
Berlin
T3
phiYeO3-12
99 %
74 %
73 %
Hc3 protein:vir:94583
protein:vir:10452
protein:vir:2203
Berlin
phiA1122
T7
99 %
65 %
65 %