Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 33 lcl|NC_010391.1_cdsid_YP_001700566.1 HHsearch (proba=100.00%)
Portal 32 lcl|NC_010391.1_cdsid_YP_001700565.1 HHsearch (proba=100.00%)
TermL 30 lcl|NC_010391.1_cdsid_YP_001700563.1 Blast (e-value=0)
MTP NOT FOUND
Sheath NOT FOUND
Ad1 31 lcl|NC_010391.1_cdsid_YP_001700564.1 HHsearch (proba=99.96%)
Hc1 35 lcl|NC_010391.1_cdsid_YP_001700568.1 HHsearch (proba=98.02%)
Ne1 36 lcl|NC_010391.1_cdsid_YP_001700569.1 HHsearch (proba=100.00%)
Tc1 37 lcl|NC_010391.1_cdsid_YP_001700570.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.



Proteins Superfamilies Observed Intergene Distance Expected Intergene Distance
Ad1<->Hc1 4 2
Tc1<->Ad1 6 4
Ne1<->Ad1 5 3


Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:79548
protein:vir:79246
protein:vir:99228
cdtI
Phage MP22
DMS3
73 %
25 %
25 %
Portal protein:vir:79538
protein:vir:96738
protein:vir:10321
cdtI
VP882
VHML
62 %
22 %
22 %
TermL protein:vir:79539
protein:vir:6384
protein:vir:10320
cdtI
BcepNazgul
VHML
66 %
41 %
24 %
Ad1 protein:vir:79544
protein:vir:96750
protein:vir:3419
cdtI
VP882
lambda
49 %
10 %
23 %
Hc1 protein:vir:395
protein:vir:3426
protein:vir:97237
N15
lambda
M6
23 %
22 %
18 %
Ne1 protein:vir:79555
protein:vir:396
protein:vir:3427
cdtI
N15
lambda
77 %
60 %
53 %
Tc1 protein:vir:79571
protein:vir:397
protein:vir:3428
cdtI
N15
lambda
65 %
51 %
44 %