Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 33 lcl|NC_010355.1_cdsid_YP_001686874.1 HHsearch (proba=100.00%)
Portal 31 lcl|NC_010355.1_cdsid_YP_001686872.1 HHsearch (proba=100.00%)
TermL 29 lcl|NC_010355.1_cdsid_YP_001686870.1 Blast (e-value=1e-40)
MTP 40 lcl|NC_010355.1_cdsid_YP_001686881.1 Blast (e-value=4e-27)
Sheath NOT FOUND
Ad1 37 lcl|NC_010355.1_cdsid_YP_001686878.1 HHsearch (proba=100.00%)
Hc1 38 lcl|NC_010355.1_cdsid_YP_001686879.1 HHsearch (proba=98.90%)
Ne1 42 lcl|NC_010355.1_cdsid_YP_001686883.1 HHsearch (proba=99.60%)
Tc1 NOT FOUND
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.



Proteins Superfamilies Observed Intergene Distance Expected Intergene Distance
Ne1<->Hc1 4 2
Ne1<->Ad1 5 3


Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:4456
protein:vir:485
protein:vir:100247
ST64B
P27
Bcep176
39 %
39 %
35 %
Portal protein:vir:80333
protein:vir:1431
protein:vir:100150
phi644-2
phiE125
phi1026b
31 %
31 %
30 %
TermL protein:vir:100097
protein:vir:481
protein:vir:81178
phi1026b
P27
Geobacillus virus E2
25 %
25 %
24 %
MTP protein:vir:97240
protein:vir:95133
protein:vir:80398
M6
PA73
BcepGomr
25 %
25 %
21 %
Ad1 protein:vir:1435
protein:vir:80320
protein:vir:8430
phiE125
phi644-2
Omega
16 %
15 %
18 %
Hc1 protein:vir:97237
protein:vir:80382
protein:vir:107669
M6
BcepGomr
T1
19 %
17 %
20 %
Ne1 protein:vir:103280
protein:vir:94994
protein:vir:79638
JK06
KS7
TLS
23 %
20 %
19 %