Proline

how_to:studio:viewprotset - [PTM Protein Sites Window]

Anonymous (anonymous@undisclosed.example.com) — 2016-11-10T15:17:27+0200

Display MS Queries, PSM, Peptides, Protein Sets, PTM Protein Sites or Adjacency Matrices Functionality Access To display data of an Identification Summary: - right click on an Identification Summary - click on the menu “Display Identification Summary >

prolineworkflow - [Create a Project]

Anonymous (anonymous@undisclosed.example.com) — 2016-11-10T15:11:30+0200

Getting Started: User case example Global Overview Note: This page will give you the steps of the most straigth-forward workflow in Proline. To see more details on what can be done and how, please consult the 'How To' page. No matter which User Interface (Studio or Web) you will use, Proline's workflow remains the same:

how_to:studio:preferences

Anonymous (anonymous@undisclosed.example.com) — 2016-09-22T17:09:07+0200

User Preferences The dialog is accessed through the top-bar File submenu. The dialog itself provides the user with the means required to change a series of options according to his personal préférences. For the time being, the number of the available user préférences/settings is minimal. Regardless of the limited for now options, the available user préférences are organized into the following categories. (Subject to change) :

how_to:studio:preferences.png - créée

Anonymous (anonymous@undisclosed.example.com) — 2016-09-22T16:06:16+0200

how_to:start

Anonymous (anonymous@undisclosed.example.com) — 2016-09-22T15:53:59+0200

How to :!: Current documentation corresponds to Proline Release 1.1 Note: Read the Concepts & Principles documentation to understand main concepts and algorithms used in Proline. Proline Admin * Create a Proline User * Create a Proline Project Proline Studio Creation/Deletion * Open a session and access to my projects * Create a new project * Create a Dataset * Import a Search Result * Delete Data and clean project

how_to:studio:rsvalidation - [Validation Dialog]

Anonymous (anonymous@undisclosed.example.com) — 2016-07-08T08:23:42+0200

How to validate a Search Result See description of Validation Algorithm. Starting Validation To validate a Search Result: - Select one or multiple Search Results to validate - Right Click to display the popup - Click on “Validate...” menu Validation Dialog

how_to:studio:generatespectrummatches

Anonymous (anonymous@undisclosed.example.com) — 2016-07-08T08:21:38+0200

Generate Spectrum Matches When importing a Search Result in Proline, user can view PSM with their associated Spectrum but by default no annotation is defined. User can generate (and save) this information * For a single PSM, select the icon near the Spectrum (see

how_to:studio:msdiag

Anonymous (anonymous@undisclosed.example.com) — 2016-07-08T08:15:35+0200

Statistical Reports (MSDiag) In order to launch MSDiag Reports (statistical reports), simply select a node on the tree and choose 'Compute statistical reports' and wait for the results to appear. This applies to a search result only. (not possible for a dataset)

how_to:web:dse_exported_files.png - créée

Anonymous (anonymous@undisclosed.example.com) — 2016-07-07T09:36:08+0200

how_to:web:dse_export_params_expanded.png - créée

Anonymous (anonymous@undisclosed.example.com) — 2016-07-07T09:25:23+0200

how_to:web:dse_export_params_collapsed.png - créée

Anonymous (anonymous@undisclosed.example.com) — 2016-07-07T09:22:55+0200

how_to:web:dse_export.png - créée

Anonymous (anonymous@undisclosed.example.com) — 2016-07-07T09:22:19+0200

how_to:web:dse_quant_results_peptide_volcano.png - créée

Anonymous (anonymous@undisclosed.example.com) — 2016-07-06T16:37:13+0200

how_to:web:dse_quant_results_protein_volcano_filtered.png - créée

Anonymous (anonymous@undisclosed.example.com) — 2016-07-06T16:29:25+0200

how_to:web:dse_quant_results_protein_volcano.png - créée

Anonymous (anonymous@undisclosed.example.com) — 2016-07-06T16:20:32+0200

how_to:web:dse_post_processing.png - créée

Anonymous (anonymous@undisclosed.example.com) — 2016-07-06T15:48:40+0200

how_to:web:dse_launch_post_processing.png - créée

Anonymous (anonymous@undisclosed.example.com) — 2016-07-06T15:47:55+0200

how_to:web:dse_quant_results_peaks.png - créée

Anonymous (anonymous@undisclosed.example.com) — 2016-07-06T15:40:51+0200

how_to:web:dse_quant_results_features.png - créée

Anonymous (anonymous@undisclosed.example.com) — 2016-07-06T15:35:36+0200

how_to:web:dse_quant_results_maps_alignment.png

Anonymous (anonymous@undisclosed.example.com) — 2016-07-06T12:22:48+0200