====== Proline server installation using archive files ======

First check that all [[setupguide:start#requirements|requirements]] are first installed on the computer. \\ 
Then download the zip archive containing Proline components from the dedicated website (http://proline.profiproteomics.fr/download/).

The Proline Server archive file contains three others archives corresponding to the [[setupguide:start#architecture_overview|different components]].

  * Proline WebCore: the Proline Server 
  * Proline Admin GUI: administration 
  * Sequence Repository: see [[.:seqRepoInstall|specific documentation]].

Unzip these components on the appropriated computer (Proline Server and Proline Admin is recommended to be on the same computer. Sequence Repository is recommended to be installed on the computer where fasta files are accessible)

Once Proline is installed you must initialize Proline datastores and settings.

On this purpose, the Proline-Admin software is provided with the Proline Suite. It is available as a command-line tool or as Graphical Interface called Proline-Admin GUI.
We will guide you through this process, step by step, using both these tools.

===== Setting up the Datastore and Proline Server =====

You can either use the graphical interface [[setupguide:setup_with_prolineadmin_gui#setup with prolineadmin gui| ProlineAdmin GUI]] or use the [[setupguide:setup_with_prolineadmin#setup_with_prolineadmin| command-line tool ProlineAdmin ]] .


===== Running the server =====

Administrator can change default amount of memory used by the server in the ''jetty-runner.bat'' /''jetty-runner.sh'' file. If the server is configured with large amount of memory, it is recommended to increase this value.
Change the value of -Xmx option: Xmx4g => -Xmx9g to pass from default 4 GO to 8GO.


Run ''jetty-runner.bat'' (or jetty-runner.sh on Linux system) to start the jetty server. You should now be able to access ProlineWeb-Core by typing   [[http://localhost:8080/proline]] or [[http://<host>:8080/proline]] in your favourite browser. The following message must appear: 

<code>
ProlineWeb-Core working !

Number of IVersion services : <X>
fr.proline.core.wsl.Version Module: ProlineWeb-Core Version: <XXX>
fr.proline.module.parser.omssa.Version Module: PM-OmssaParser Version: <YYY>
fr.proline.module.parser.mascot.Version Module: PM-MascotParser Version:<XYZ>
fr.proline.admin.Version Module: Proline-Admin Version: <ZYW>
fr.proline.util.ScalaVersion Module: ProFI-Commons-Scala Version: <YZX>
fr.proline.util.JavaVersion Module: ProFI-Commons-Java Version: <YXZ>
fr.proline.core.service.Version Module: Proline-OMP Version: <WYZ>
</code>