====== Proline Concepts & Principles ======

  * Dataset types:
    * [[.:ResultFile|Result File]]
    * [[.:RS|Search Results]]
    * [[.:DecoySearches|Decoy Searches]]
    * [[.:RSM|Identification Summary]]
  * Data Processing:
    * [[.:ProteinInferer|Protein Inference]]
    * [[.:ProtScoring|Protein and Proteins Sets scoring]]
    * [[.:FDREstimator|FDR Estimation]]
    * [[.:RSValidation|Validation Algorithm]]
    * [[.:ProtSetFiltering|Protein Sets Filtering]]
    * [[.:MergeResultSets|Merge multiple Search Results]]
    * [[.:MergeResultSummaries|Merge multiple Identification Summaries]]
    * [[.:SpectralCountDef|Compare with Spectral Count]]
    * [[.:quantitionPrinciple|Quantitation (Principle)]]
      * [[.:lcmsquantitation|LC-MS quantification]]
      * [[.:lcmsquantitationworkflows|LC-MS quantification workflows]]      
      * [[.:mzdbprocessing|mzDB-processing]]
      * [[.:lcmslabelfreequantitationworkflow|Label-free LC-MS quantitation workflow]]
    * [[.:quantitionConfig|Quantitation (Configuration)]]
        * [[.:lcmslabelfreequantitationConfig|Label-free LC-MS quantitation configuration]]
        * [[.:lcmsquantitationAdvancedConfig|Post-processing of LC-MS quantitative results]]

  * Data Import/Export:
    * [[.:XLSExport|Identification Summary Export]]