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IRMa main window is splitted in three panels : the left one allow users to browse protein hits, the rigth one shows submitted queries and peptide sequences matching this queries. The center panel contains tabs representing Protein hit details, Search parameters, Query details and the list of identified proteins.
This pane displays the proteins and the set of peptides collapsed into the selected hit :
At the top of this pane, a toolbar allow users to :
The user can replace the main protein by choosing another protein among the list of proteins identified by the same set of PSM (right-clic on the protein you want to set as the new “main” protein).
By selecting a PSM, users can :
Displays potential peptide sequence matches of the selected query. Right-clic on a PSM to display the annotated spectra of the selected peptide and the ion fragment matches.
Informations about the search : taxonomy, parameters, source file, etc.
For each hit in the identification result, display accession, description, score, matches count, etc of the main protein
right pane (query-centric browser) hierarchical representation of the queries :
La barre d'outils placée en haut de la fenêtre permet de réaliser les opérations suivantes :