userguide:ihm
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userguide:ihm [2009/12/01 11:34] 132.168.73.124 |
userguide:ihm [2009/12/01 15:17] (current) 132.168.73.124 |
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| At the top of this pane, a toolbar allow users to : | At the top of this pane, a toolbar allow users to : | ||
| - | * access to Mascot Protein View {{:userguide:viewpg.png|}} | + | * access Mascot Protein View page{{:userguide:viewpg.png|}} |
| - | * access to public datasource associated with this protein {{:userguide:webprotein.png|}} | + | * access protein description provided by public datasource {{:userguide:webprotein.png|}} |
| - | * delete the hit from the result if it does not contain any more significant PSM | + | * delete the selected hit from the result if it does not contains any more significant PSM |
| - | * group the hit with another one if IRMa detect that the set of PSM classified as significants is a subset of PSM belonging to another hit. | + | * group the selected hit with another one if IRMa detect that the set of PSM classified as significants is a subset of PSM belonging to another hit. |
| - | The user can replace the main protein by another protein identified by the same set of PSM (right-clic on the protein you want to move as the new "main" protein). | + | The user can replace the main protein by choosing another protein among the list of proteins identified by the same set of PSM (right-clic on the protein you want to set as the new "main" protein). |
| - | Au niveau des peptides, il est possible d'effectuer les opérations suivantes sur cette vue : | + | By selecting a PSM, users can : |
| - | * Obtenir la vue Mascot d'un peptide (peptide view) via une connexion au serveur Mascot. Pour ce faire, il faut sélectionner un peptide dans l'un des tableaux et presser la barre d'espace. | + | * Acces Mascot peptide view (select PSM and press space bar or rigth-clic for contextual menu). |
| - | * Invalider un peptide en sélectionnant un ou plusieurs peptides dans le tableau des peptides significatifs et en pressant la touche A (pour Ambigu). | + | * Classify a ambiguous a selected PSM (select PSM and press A for Ambiguous). |
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| === Query details === | === Query details === | ||
| - | On retrouve ici, pour la query couramment sélectionnée, la liste des 10 peptides qui ont matchés. Pour chacun de ces peptides, il est possible de visualiser le spectre annoté et le tableau des ions fragments. | + | |
| + | Displays potential peptide sequence matches of the selected query. Right-clic on a PSM to display the annotated spectra of the selected peptide and the ion fragment matches. | ||
| === Search Parameters === | === Search Parameters === | ||
| - | Regroupe les informations sur la recherche Mascot : base utilisé, fichier soumis, taxonomie ... | + | |
| + | Informations about the search : taxonomy, parameters, source file, etc. | ||
| === Proteins List === | === Proteins List === | ||
| - | Liste de toutes les protéines principales identifiée avec leur description, leur score et le nombre de peptides ayant | ||
| - | **__La partie droite__** (navigation par query) représente sous la forme d'une hiérarchie de query de l'identification : | + | For each hit in the identification result, display accession, description, score, matches count, etc of the main protein |
| - | * les query {{:userguide:query.png|}} | + | |
| - | * les peptides {{:userguide:peptide.png|}} | + | |
| - | * les hits {{:userguide:protein.png|}} | + | |
| - | La barre d'outils placée en haut de la fenêtre permet de réaliser les opérations suivantes : | + | **__right pane__** (query-centric browser) hierarchical representation of the queries : |
| + | * queries {{:userguide:query.png|}} | ||
| + | * peptides {{:userguide:peptide.png|}} | ||
| + | * hits {{:userguide:protein.png|}} | ||
userguide/ihm.1259663682.txt.gz · Last modified: 2009/12/01 11:34 by 132.168.73.124
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