This shows you the differences between two versions of the page.
Both sides previous revision Previous revision Next revision | Previous revision | ||
userguide:export_db [2009/12/02 15:13] 132.168.73.9 |
userguide:export_db [2016/07/25 10:54] (current) 132.168.72.225 |
||
---|---|---|---|
Line 1: | Line 1: | ||
- | ===== Database Export ===== | + | ====== Database Export ====== |
Many validated identification results can be exported within a relational database. | Many validated identification results can be exported within a relational database. | ||
- | This feature requires : | + | This feature requires |
- | * Postgresql 8.1 | + | * Postgresql |
* an existing database | * an existing database | ||
- | ==== Installing Postgresql ==== | + | For more information on MSI db, see [[..:msidb|corresponding page]] |
- | {{:userguide:postgres-install-msi.png?400}} | + | |
- | * Execute PostgreSQL 8.1.msi | + | |
- | * Follow instructions | + | |
- | * Note : master password needs to be set at this stage | + | |
+ | ===== Connecting to a database ===== | ||
+ | * Disconnect from the database and quit pgAdmin III | ||
+ | * Go back to IRMa | ||
+ | * In IRMa preferences select the DB export tab | ||
+ | * Under Connection settings, select Edit | ||
+ | {{:userguide:connecting-to-database-1.png?300}} | ||
- | === Setting up a database === | + | * Test connexion to make sure you can access the DB |
- | {{:userguide:setting-up-database.png?600}} | + | {{:userguide:connecting-to-database-2.png?300}}{{:userguide:connecting-to-database-3.png?250}} |
- | {{:userguide:setting-up-database-2.png?600}} | + | * Make sure that under the tab « Saved elements » you deselect the export of unassigned queries and peptides (this slows down the transfer and tracks quite useless information) |
+ | {{:userguide:connecting-to-database-4.png?300}} \\ | ||
- | Under user « postgres » : | ||
- | * Connect to database (dble_click) | ||
- | * Create new user « example » with permission to login and create a database | ||
- | * Disconnect from database (R-click) | ||
- | * Reconnect under « example » username (cf. above) | ||
- | {{:userguide:setting-up-database-3.png?500}} | ||
- | {{:userguide:setting-up-database-4.png?600}} | + | * {{:userguide:connecting-to-database-5.png?500}} |
- | * Select database Uppsala and click the button « execute arbitraty sql queries » | + | |
- | * In query window select file/open | + | |
- | * Select the file MSIDBModel (previously named ExportDBModel) included in the IRMa installation folder | + | |
- | * All the queries necessary to create the MSidb are now open | + | |
- | {{:userguide:setting-up-database-5.png?500}} \\ | + | * **You’re ready to export** |
- | {{:userguide:setting-up-database-6.png?400}} \\ | + | {{:userguide:connecting-to-database-6.png?500}} |
- | {{:userguide:setting-up-database-7.png?400}} \\ | + | |
- | * Execute the queries | + | |
- | * The database gets populated with all the tables IRMa needs to store identifications data | + | |
- | |||
- | For more information on MSI db, see [[..:msidb|corresponding page]] | ||