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userguide:export_db [2009/02/03 13:28] 132.168.73.124 |
userguide:export_db [2012/03/02 14:58] 132.168.72.131 |
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- | ===== Database Export ===== | + | ====== Database Export ====== |
+ | Many validated identification results can be exported within a relational database. | ||
+ | This feature requires : | ||
+ | * Postgresql 8.x, 9.x (test done on 8.1, 8.4, 9.1) | ||
+ | * an existing database | ||
+ | |||
+ | For more information on MSI db, see [[..:msidb|corresponding page]] | ||
+ | |||
+ | ===== Installing a database ===== | ||
+ | |||
+ | ==== Installing Postgresql ==== | ||
+ | {{:userguide:postgres-install-msi.png?400}} | ||
+ | * Execute PostgreSQL 8.1.msi | ||
+ | * Follow instructions | ||
+ | * Note : master password needs to be set at this stage | ||
+ | |||
+ | |||
+ | === Setting up a database === | ||
+ | {{:userguide:setting-up-database.png?600}} | ||
+ | |||
+ | {{:userguide:setting-up-database-2.png?600}} | ||
+ | |||
+ | Under user « postgres » : | ||
+ | * Connect to database (dble_click) | ||
+ | * Create new user « example » with permission to login and create a database | ||
+ | * Disconnect from database (R-click) | ||
+ | * Reconnect under « example » username (cf. above) | ||
+ | {{:userguide:setting-up-database-3.png?500}} | ||
+ | |||
+ | {{:userguide:setting-up-database-4.png?600}} | ||
+ | * Select database Uppsala and click the button « execute arbitraty sql queries » | ||
+ | * In query window select file/open | ||
+ | * Select the file MSIDBModel (previously named ExportDBModel) included in the IRMa installation folder | ||
+ | * All the queries necessary to create the MSidb are now open | ||
+ | |||
+ | {{:userguide:setting-up-database-5.png?500}} \\ | ||
+ | {{:userguide:setting-up-database-6.png?400}} \\ | ||
+ | {{:userguide:setting-up-database-7.png?400}} \\ | ||
+ | * Execute the queries | ||
+ | * The database gets populated with all the tables IRMa needs to store identifications data | ||
+ | |||
+ | |||
+ | ===== Connecting to a database ===== | ||
+ | * Disconnect from the database and quit pgAdmin III | ||
+ | * Go back to IRMa | ||
+ | * In IRMa preferences select the DB export tab | ||
+ | * Under Connection settings, select Edit | ||
+ | {{:userguide:connecting-to-database-1.png?300}} | ||
+ | |||
+ | * Test connexion to make sure you can access the DB | ||
+ | {{:userguide:connecting-to-database-2.png?300}}{{:userguide:connecting-to-database-3.png?250}} | ||
+ | |||
+ | * Make sure that under the tab « Saved elements » you deselect the export of unassigned queries and peptides (this slows down the transfer and tracks quite useless information) | ||
+ | {{:userguide:connecting-to-database-4.png?300}} \\ | ||
+ | |||
+ | |||
+ | * {{:userguide:connecting-to-database-5.png?500}} | ||
+ | |||
+ | * **You’re ready to export** | ||
+ | {{:userguide:connecting-to-database-6.png?500}} | ||
+ | |||
- | Validated identification results can be exported whithin a relational database : | ||
- | * [[model version 18|{{:userguide:msidbmodel.png}}]] | ||
- | * {{:userguide:msimodel_d1.pdf|model version D.1}} |