userguide:export_db
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userguide:export_db [2009/02/03 13:28] 132.168.73.124 |
userguide:export_db [2012/03/02 14:58] 132.168.72.131 |
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| - | ===== Database Export ===== | + | ====== Database Export ====== |
| + | Many validated identification results can be exported within a relational database. | ||
| + | This feature requires : | ||
| + | * Postgresql 8.x, 9.x (test done on 8.1, 8.4, 9.1) | ||
| + | * an existing database | ||
| + | |||
| + | For more information on MSI db, see [[..:msidb|corresponding page]] | ||
| + | |||
| + | ===== Installing a database ===== | ||
| + | |||
| + | ==== Installing Postgresql ==== | ||
| + | {{:userguide:postgres-install-msi.png?400}} | ||
| + | * Execute PostgreSQL 8.1.msi | ||
| + | * Follow instructions | ||
| + | * Note : master password needs to be set at this stage | ||
| + | |||
| + | |||
| + | === Setting up a database === | ||
| + | {{:userguide:setting-up-database.png?600}} | ||
| + | |||
| + | {{:userguide:setting-up-database-2.png?600}} | ||
| + | |||
| + | Under user « postgres » : | ||
| + | * Connect to database (dble_click) | ||
| + | * Create new user « example » with permission to login and create a database | ||
| + | * Disconnect from database (R-click) | ||
| + | * Reconnect under « example » username (cf. above) | ||
| + | {{:userguide:setting-up-database-3.png?500}} | ||
| + | |||
| + | {{:userguide:setting-up-database-4.png?600}} | ||
| + | * Select database Uppsala and click the button « execute arbitraty sql queries » | ||
| + | * In query window select file/open | ||
| + | * Select the file MSIDBModel (previously named ExportDBModel) included in the IRMa installation folder | ||
| + | * All the queries necessary to create the MSidb are now open | ||
| + | |||
| + | {{:userguide:setting-up-database-5.png?500}} \\ | ||
| + | {{:userguide:setting-up-database-6.png?400}} \\ | ||
| + | {{:userguide:setting-up-database-7.png?400}} \\ | ||
| + | * Execute the queries | ||
| + | * The database gets populated with all the tables IRMa needs to store identifications data | ||
| + | |||
| + | |||
| + | ===== Connecting to a database ===== | ||
| + | * Disconnect from the database and quit pgAdmin III | ||
| + | * Go back to IRMa | ||
| + | * In IRMa preferences select the DB export tab | ||
| + | * Under Connection settings, select Edit | ||
| + | {{:userguide:connecting-to-database-1.png?300}} | ||
| + | |||
| + | * Test connexion to make sure you can access the DB | ||
| + | {{:userguide:connecting-to-database-2.png?300}}{{:userguide:connecting-to-database-3.png?250}} | ||
| + | |||
| + | * Make sure that under the tab « Saved elements » you deselect the export of unassigned queries and peptides (this slows down the transfer and tracks quite useless information) | ||
| + | {{:userguide:connecting-to-database-4.png?300}} \\ | ||
| + | |||
| + | |||
| + | * {{:userguide:connecting-to-database-5.png?500}} | ||
| + | |||
| + | * **You’re ready to export** | ||
| + | {{:userguide:connecting-to-database-6.png?500}} | ||
| + | |||
| - | Validated identification results can be exported whithin a relational database : | ||
| - | * [[{{:userguide:msidbmodel.png|model version 18}}]] | ||
| - | * {{:userguide:msimodel_d1.pdf|model version D.1}} | ||
userguide/export_db.txt · Last modified: 2016/07/25 10:54 by 132.168.72.225
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