start
Differences
This shows you the differences between two versions of the page.
| Both sides previous revision Previous revision Next revision | Previous revision | ||
|
start [2012/03/02 14:44] 132.168.72.131 |
start [2012/10/05 07:56] (current) 132.168.72.131 |
||
|---|---|---|---|
| Line 23: | Line 23: | ||
| * Export validated results to Excel® | * Export validated results to Excel® | ||
| * Generate PDF document with annotated spectra and matched fragment ions table for publication purposes. | * Generate PDF document with annotated spectra and matched fragment ions table for publication purposes. | ||
| - | * Export validated results in a relational database | + | * [[#export_to_relational_database|Export validated results]] in a relational database |
| * Batch mode to automatically validate multiple identification results | * Batch mode to automatically validate multiple identification results | ||
| * Automatic mode integrated to Mascot Daemon | * Automatic mode integrated to Mascot Daemon | ||
| * ... | * ... | ||
| - | |||
| ===== Documentations ===== | ===== Documentations ===== | ||
| Line 45: | Line 44: | ||
| ==== Concepts ==== | ==== Concepts ==== | ||
| - | Filtering | + | The [[principle|concepts]] page will give you information on concepts used by this toolbox. |
| - | Automatique filtering : few filters can be applied at any stage of the validation purpose. These filters can be based on the PSM score and rank, on PTM or regular expressions on PSM properties. The filters classifies the PSM into significative group (used for the protien identification) or ambiguous group (unrelevant for identification). | + | ---- |
| - | Manual filtering : User can choose to manually set a ambiguous PSM as significative and inversly | + | //to migrate on other pages// |
| - | Dynamic grouping during validation | + | |
| - | + | ||
| - | Export | + | |
| - | + | ||
| - | export to Excel® | + | |
| - | Generate PDF document with annotated spectra and matched fragment ions table for publication purposes. | + | |
| - | Create Identification Results Databases | + | |
| - | + | ||
| - | Automatic and Batch mode | + | |
| - | + | ||
| - | Batch mode to automatically validate multiple identification results | + | |
| - | Automatic mode integrated to Mascot Daemon | + | |
| - | + | ||
| - | * [[Features| ... full features]] | + | |
| IRMa can be used in three different ways : | IRMa can be used in three different ways : | ||
| Line 70: | Line 55: | ||
| * [[autoUserGuide#scripts|Scripts]] : Some hints on how to use scripts for Batch and AutoIRMa | * [[autoUserGuide#scripts|Scripts]] : Some hints on how to use scripts for Batch and AutoIRMa | ||
| - | But what ever mode you use, the [[principle|IRMa principles]] is the entry point to understand this toolbox. | ||
| ==== Export to Relational Database ==== | ==== Export to Relational Database ==== | ||
| Line 77: | Line 61: | ||
| ==== Versions ==== | ==== Versions ==== | ||
| + | {{:msidb_irma_heidi_compat.png |Which hEIDI/IRMa/MSIdb}} | ||
| **Legend** : \\ | **Legend** : \\ | ||
| + | |||
| release date : IRMa version number (DB model version compatibility) | release date : IRMa version number (DB model version compatibility) | ||
| + | 05/10/2012 : IRMa 1.31.0 (D.3 & D.4 & E.2) | ||
| + | 12/03/2012 : IRMa 1.30.4 (D.3 & D.4 & E.2) :!: Not E.1. any more, execute migration E.1 to E.2\\ | ||
| + | 02/03/2012 : IRMa 1.30.3 (D.3 & D.4 & E.1) \\ | ||
| 24/01/2012 : IRMa 1.30.2 (D.3 & D.4 & E.1) \\ | 24/01/2012 : IRMa 1.30.2 (D.3 & D.4 & E.1) \\ | ||
| 20/12/2011 : IRMa 1.30.1 (D.3 & D.4 & E.1) \\ | 20/12/2011 : IRMa 1.30.1 (D.3 & D.4 & E.1) \\ | ||
start.1330695899.txt.gz · Last modified: 2012/03/02 14:44 by 132.168.72.131
Page Tools
Except where otherwise noted, content on this wiki is licensed under the following license: CC Attribution-Share Alike 4.0 International
