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| * Export validated results to Excel® | * Export validated results to Excel® | ||
| * Generate PDF document with annotated spectra and matched fragment ions table for publication purposes. | * Generate PDF document with annotated spectra and matched fragment ions table for publication purposes. | ||
| - | * Export validated results in a relational database (see [[userguide:export_db| specific documentation]]) | + | * [[#export_to_relational_database|Export validated results]] in a relational database |
| * Batch mode to automatically validate multiple identification results | * Batch mode to automatically validate multiple identification results | ||
| * Automatic mode integrated to Mascot Daemon | * Automatic mode integrated to Mascot Daemon | ||
| - | * [[Features| ... full features]] | + | * ... |
| + | ===== Documentations ===== | ||
| + | |||
| + | :!: Under Construction | ||
| ==== Getting Started ==== | ==== Getting Started ==== | ||
| - | Read our [[firstSteps|quick start guide]]. | + | * The [[instalGuide|installation guide]] gives informations on the distribution content. |
| + | * Read our [[firstSteps|quick start guide]]. | ||
| - | ==== Documentation ==== | + | ==== How To ==== |
| - | The [[instalGuide|installation guide]] gives informations on the distribution content. | + | |
| + | Find quick answer to your questions in the [[how_to|How to]] section. | ||
| + | |||
| + | ==== Concepts ==== | ||
| + | |||
| + | The [[principle|concepts]] page will give you information on concepts used by this toolbox. | ||
| + | |||
| + | ---- | ||
| + | //to migrate on other pages// | ||
| IRMa can be used in three different ways : | IRMa can be used in three different ways : | ||
| * [[userGuide|Graphical]] : IRMa provides a graphical user interface allowing users to validate Mascot results manually or by applying filters and to navigate within the identification result. | * [[userGuide|Graphical]] : IRMa provides a graphical user interface allowing users to validate Mascot results manually or by applying filters and to navigate within the identification result. | ||
| * [[batchUserGuide|Batch]] : users can create scripts in order to repeat IRMa commands (parse, filter, save, export, etc) among many Mascot files. | * [[batchUserGuide|Batch]] : users can create scripts in order to repeat IRMa commands (parse, filter, save, export, etc) among many Mascot files. | ||
| - | * [[autoUserGuide|Automatic]]: IRMa can also be run from command line. This feature allows you to integrate IRMa with Mascot daemon utility in order to create a fully automated pipeline. | + | * [[autoUserGuide|AutoIRMa]] : IRMa can also be run from command line. This feature allows you to integrate IRMa with Mascot daemon utility in order to create a fully automated pipeline. |
| + | * [[autoUserGuide#scripts|Scripts]] : Some hints on how to use scripts for Batch and AutoIRMa | ||
| - | But what ever mode you use, the [[principle|IRMa principles]] is the entry point to understand this toolbox. | ||
| ==== Export to Relational Database ==== | ==== Export to Relational Database ==== | ||
| Line 49: | Line 61: | ||
| ==== Versions ==== | ==== Versions ==== | ||
| + | {{:msidb_irma_heidi_compat.png |Which hEIDI/IRMa/MSIdb}} | ||
| **Legend** : \\ | **Legend** : \\ | ||
| + | |||
| release date : IRMa version number (DB model version compatibility) | release date : IRMa version number (DB model version compatibility) | ||
| + | 05/10/2012 : IRMa 1.31.0 (D.3 & D.4 & E.2) | ||
| + | 12/03/2012 : IRMa 1.30.4 (D.3 & D.4 & E.2) :!: Not E.1. any more, execute migration E.1 to E.2\\ | ||
| + | 02/03/2012 : IRMa 1.30.3 (D.3 & D.4 & E.1) \\ | ||
| + | 24/01/2012 : IRMa 1.30.2 (D.3 & D.4 & E.1) \\ | ||
| + | 20/12/2011 : IRMa 1.30.1 (D.3 & D.4 & E.1) \\ | ||
| + | 19/12/2011 : IRMa 1.30.0 (D.3 & D.4 & E.1) \\ | ||
| + | 28/10/2011 : IRMa 1.29.2 (D.3 & D.4 & E.1) \\ | ||
| + | 03/08/2011 : IRMa 1.29.1 (D.3 & D.4 & E.1) \\ | ||
| + | 28/07/2011 : IRMa 1.29.0 (D.3 & D.4 & E.1) \\ | ||
| + | 01/02/2011 : IRMa 1.28.1 (D.3 & D.4 & E.1) \\ | ||
| + | 20/10/2010 : IRMa 1.28.0 (D.3 & D.4 & E.1) \\ | ||
| 19/10/2010 : IRMa 1.27.3 (D.3 & D.4) \\ | 19/10/2010 : IRMa 1.27.3 (D.3 & D.4) \\ | ||
| 11/10/2010 : IRMa 1.27.2 (D.3 & D.4) \\ | 11/10/2010 : IRMa 1.27.2 (D.3 & D.4) \\ | ||
| Line 71: | Line 96: | ||
| [[ReleaseNote|Release Note]] | [[ReleaseNote|Release Note]] | ||
| - | |||
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