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--- releasenote [2011/02/01 17:14]
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+++ releasenote [2012/10/05 08:02] (current)
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 [[:|Back Home]]
+===== IRMa 1.31.0 =====
+====  Feature  ====
+  * Les peptides dupliqués issus d'un même requête n'étaient pas pris en compte dans les grouping (et donc rattachés à aucune protéine). Permet de filter ou non ces peptides lors du parse de .dat ([[https://bioproj.extra.cea.fr/redmine/issues/3987|#3987]])
+  * Export XLS : Ajout de l'expectation value des peptides ([[https://bioproj.extra.cea.fr/redmine/issues/5792|#5792]])+ Residue avant/apres pour les peptides dupliqués d'une même query ([[https://bioproj.extra.cea.fr/redmine/issues/4849|#4849]])
+  * Ajout du filtre des protéines (en fonction du nombre de peptides & leur score) dans IRMa Batch/auto ([[https://bioproj.extra.cea.fr/redmine/issues/6149|#6149]])
+* renomme "prec. intensity" en "TIC MSMS" dans la table des peptides...
+===== IRMa 1.30.4 =====
+ :!: Compatible with MSIdb E.2. (for E.series, still and D.3 & D.4 for D.series)
+====  Bug fixing ====
+  * Add leaves_match_count properties in MSIdb (version E.2). In order to increase speed for further algorithm (spectral case for instance : issue [[https://bioproj.extra.cea.fr/redmine/issues/4575|#4575]])
+  * Exception if search settings contained Fixed PTM on multiple residues. ( issue [[https://bioproj.extra.cea.fr/redmine/issues/4393|#4393]])
+===== IRMa 1.30.3 =====
+====  Bug fixing ====
+  * Error in ambiguous peptides set update when running Single Peptide Per Query Filter ( issue [[https://bioproj.extra.cea.fr/redmine/issues/4524|#4524]])
+  * Log change : When running Change Master Filter, if this operation needs ambiguous peptides to be deleted in a proteins group and these peptides belongs to other proteins groups as significant, a Warning message is displayed in log.
+===== IRMa 1.30.2 =====
+====  Bug fixing ====
+  * encoding problem in XLS export (issue [[https://bioproj.extra.cea.fr/redmine/issues/4279|#4279]])
+===== IRMa 1.30.1 =====
+====  Bug fixing ====
+  * Query filter, error in query assignment (Issue [[https://bioproj.extra.cea.fr/redmine/issues/4013|#4013]])
+===== IRMa 1.30.0 =====
+==== Feature ====
+  * Feature [[https://bioproj.extra.cea.fr/redmine/issues/835|#835]] : NEW Filter! False Positive Rate Seeker filter. See [[userguide:filtres#fpr_seeker_filter|filter documentation]] and [[autouserguide#scripts|script documentation]] to know more about its usage.
+  * Feature [[https://bioproj.extra.cea.fr/redmine/issues/835|#835]] : NEW Filter! Single match per query Filter. See [[userguide:filtres#single_match_per_query_filter|filter documentation]] and [[autouserguide#scripts|script documentation]] to know more about its usage.
+  * Features [[https://bioproj.extra.cea.fr/redmine/issues/2684|#2684]] & [[https://bioproj.extra.cea.fr/redmine/issues/2685|#2685]] : adding infos about specific peptides number and some other infos (#significant, #specific significant, Spectral count and Spectral count specific) in graphical mode and in excel export :
+    * All are added for Subset and Sameset proteins
+    * #specific significant and Spectral count specific added for Typical proteins (as the others already exist)
+  * Feature [[https://bioproj.extra.cea.fr/redmine/issues/3619|#3619]] : Precursor intensity is now displayable and exportable (in excel and MSIdb) if available in .dat file. Click on the square button in upper right corner of a peptide table to show the column.
+====  Bug fixing ====
+  * Issue [[https://bioproj.extra.cea.fr/redmine/issues/2771|#2771]] : In excel export Subset proteins no longer have the spectral count of the master protein
+  * Issue [[https://bioproj.extra.cea.fr/redmine/issues/3662|#3662]] : Fixed PTMs are now displayed
+  * Issue [[https://bioproj.extra.cea.fr/redmine/issues/3766|#3766]] : Statistics curves cannot anymore go below 0 (happened in rare cases).
+  * Issue [[https://bioproj.extra.cea.fr/redmine/issues/3845|#3845]] : Log of DeltaMassFilter no longer list all properties, just used ones.
+===== IRMa 1.29.2 =====
+  * Task [[https://bioproj.extra.cea.fr/redmine/issues/3448|#3448]]: code refactoring for precursor quantification export
+==== Feature ====
+  * Feature [[https://bioproj.extra.cea.fr/redmine/issues/3436|#3436]] : read and export relevant mark onto quantification data, from .rov file
+====  Bug fixing ====
+  * Issue  [[https://bioproj.extra.cea.fr/redmine/issues/3450|#3450]] : Quantitation data export : incoherence in peptide_ion
+  * Issue  [[https://bioproj.extra.cea.fr/redmine/issues/3451|#3451]] : Fake quantitation data (with NaN values) are exported
+===== IRMa 1.29.1 =====
+====  Bug fixing ====
+  * Issue [[https://bioproj.extra.cea.fr/redmine/issues/3111|#3111]] : Sometimes error (OutOfMemory error) occur while exporting to MSIdb
+===== IRMa 1.29.0 =====
+==== Feature ====
+  * Feature [[https://bioproj.extra.cea.fr/redmine/issues/2400|#2400]] : 64bits compatibility (see [[instalguide#requirements|installation guide]] how to do)
+====  Bug fixing ====
+  * Issue [[https://bioproj.extra.cea.fr/redmine/issues/2707|#2707]] : Fragments and matches compute have errors
+  * Issue [[https://bioproj.extra.cea.fr/redmine/issues/1807|#1807]] : Same .ROV can be export twice in MSIdb
+  * Issue [[https://bioproj.extra.cea.fr/redmine/issues/1957|#1957]] : PTMs duplication for the same peptide
+  * Issue [[https://bioproj.extra.cea.fr/redmine/issues/2624|#2624]] : Context name from ROV file are cryptic
+  * Issue [[https://bioproj.extra.cea.fr/redmine/issues/3054|#3054]] : Problem with quantification component set when exporting in MSIdb
+  *
 ===== IRMa 1.28.1 =====
 ====  Bug fixing ====
-  * Issue [[https://bioproj.extra.cea.fr/redmine/issues/1997|#1997]] : Can't choose db version for db export in scripts. See [[autouserguide#scripts|Scripts documentation]], Database Export part for more info on how to.
+  * Issue [[https://bioproj.extra.cea.fr/redmine/issues/1997|#1997]] : Can't choose db version for db export in scripts, default is versions “D” => It's now possible with a new //export.DB// parameter. See [[autouserguide#scripts|Scripts documentation]], Database Export part for more info on how to.
   * Issue [[https://bioproj.extra.cea.fr/redmine/issues/2035|#2035]] : DB Model script has some minor errors
   * Issue [[https://bioproj.extra.cea.fr/redmine/issues/2042|#2042]] : vE.1 data export failing for newly created DB
@@ Line 316: / Line 407: @@
 ===== Versions précédentes =====
 Voir le fichier changeNotes.html de la distribution ...

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