userguide:export_db
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userguide:export_db [2009/12/02 15:50] 132.168.73.9 |
userguide:export_db [2016/07/25 10:54] (current) 132.168.72.225 |
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| ====== Database Export ====== | ====== Database Export ====== | ||
| Many validated identification results can be exported within a relational database. | Many validated identification results can be exported within a relational database. | ||
| - | This feature requires : | + | This feature requires |
| - | * Postgresql 8.1 | + | * Postgresql |
| * an existing database | * an existing database | ||
| For more information on MSI db, see [[..:msidb|corresponding page]] | For more information on MSI db, see [[..:msidb|corresponding page]] | ||
| - | |||
| - | ===== Installing a database ===== | ||
| - | |||
| - | ==== Installing Postgresql ==== | ||
| - | {{:userguide:postgres-install-msi.png?400}} | ||
| - | * Execute PostgreSQL 8.1.msi | ||
| - | * Follow instructions | ||
| - | * Note : master password needs to be set at this stage | ||
| - | |||
| - | |||
| - | === Setting up a database === | ||
| - | {{:userguide:setting-up-database.png?600}} | ||
| - | |||
| - | {{:userguide:setting-up-database-2.png?600}} | ||
| - | |||
| - | Under user « postgres » : | ||
| - | * Connect to database (dble_click) | ||
| - | * Create new user « example » with permission to login and create a database | ||
| - | * Disconnect from database (R-click) | ||
| - | * Reconnect under « example » username (cf. above) | ||
| - | {{:userguide:setting-up-database-3.png?500}} | ||
| - | |||
| - | {{:userguide:setting-up-database-4.png?600}} | ||
| - | * Select database Uppsala and click the button « execute arbitraty sql queries » | ||
| - | * In query window select file/open | ||
| - | * Select the file MSIDBModel (previously named ExportDBModel) included in the IRMa installation folder | ||
| - | * All the queries necessary to create the MSidb are now open | ||
| - | |||
| - | {{:userguide:setting-up-database-5.png?500}} \\ | ||
| - | {{:userguide:setting-up-database-6.png?400}} \\ | ||
| - | {{:userguide:setting-up-database-7.png?400}} \\ | ||
| - | * Execute the queries | ||
| - | * The database gets populated with all the tables IRMa needs to store identifications data | ||
| - | |||
| ===== Connecting to a database ===== | ===== Connecting to a database ===== | ||
| Line 46: | Line 12: | ||
| * In IRMa preferences select the DB export tab | * In IRMa preferences select the DB export tab | ||
| * Under Connection settings, select Edit | * Under Connection settings, select Edit | ||
| - | {{:userguide:connecting-to-database-1.png|}} | + | {{:userguide:connecting-to-database-1.png?300}} |
| - | {{:userguide:connecting-to-database-2.png|}} | + | |
| - | {{:userguide:connecting-to-database-3.png|}} | + | * Test connexion to make sure you can access the DB |
| - | {{:userguide:connecting-to-database-4.png|}} | + | {{:userguide:connecting-to-database-2.png?300}}{{:userguide:connecting-to-database-3.png?250}} |
| - | {{:userguide:connecting-to-database-5.png|}} | + | |
| - | {{:userguide:connecting-to-database-6.png|}} | + | * Make sure that under the tab « Saved elements » you deselect the export of unassigned queries and peptides (this slows down the transfer and tracks quite useless information) |
| + | {{:userguide:connecting-to-database-4.png?300}} \\ | ||
| + | |||
| + | |||
| + | * {{:userguide:connecting-to-database-5.png?500}} | ||
| + | * **You’re ready to export** | ||
| + | {{:userguide:connecting-to-database-6.png?500}} | ||
| - | ===== Exporting to database ===== | ||
userguide/export_db.1259765419.txt.gz · Last modified: 2009/12/02 15:50 by 132.168.73.9
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