parse
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| ====== Parsing Mascot result file ====== | ====== Parsing Mascot result file ====== | ||
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| + | [[principle|Back to concepts]] | ||
| To parse a Mascot identification result file (.dat file), user should define some settings. | To parse a Mascot identification result file (.dat file), user should define some settings. | ||
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| * **Subset** | * **Subset** | ||
| * Subset threshold definition: fractions core for a protein to be counted as a subset. Its score must be equal or greater than ''Master_protein_score * (1-subset threshold)'' | * Subset threshold definition: fractions core for a protein to be counted as a subset. Its score must be equal or greater than ''Master_protein_score * (1-subset threshold)'' | ||
| + | * **Read sequence** parser proerties : | ||
| + | * Specify the rule to use to read protein sequence: get sequence only if present in identification result file, get sequence from mascot server for master proteins if necessary, get sequence from mascot server for all proteins. The latest mode may be long as a server connection will occured for almost all proteins | ||
| ==== Subset threshold explanation ==== | ==== Subset threshold explanation ==== | ||
parse.1330699038.txt.gz · Last modified: 2012/03/02 15:37 by 132.168.72.131
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