Differences

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--- autouserguide [2011/05/12 14:32]
132.168.72.130
+++ autouserguide [2011/12/19 17:51] (current)
132.168.72.130
@@ Line 116: / Line 116: @@
     </parameters>
   </delete.Proteins>
+</code>
+=== Single match per query filter  ===
+**Nota** : no parameter to set.
+<code xml>
+  <filter.PSM>
+    <parameter name="filter.class.name">
+      <value class="string">cea.irma.model.validation.SingleMatchPerQueryFilter</value>
+    </parameter>
+  </filter.PSM>
+</code>
+=== FPR seeker filter ===
+  * FPR = False Positive Rate
+  * SaR = Score and Rank
+  * DM = Delta Mass
+See inside xml below to find comments:
+<code xml>
+  <filter.FPR.Seeker>
+    <parameters>
+      <parameter name="seek.fpr.with.score.and.rank.filter">
+        <value class="boolean">true</value> <!-- true : the SaR filter will be used. Set to false if you juste want DM to be used. If both are set to false, the default one (SaR) will be used-->
+      </parameter>
+      <parameter name="seek.fpr.with.delta.mass.filter">
+        <value class="boolean">true</value> <!-- true : the DM filter will be used. Set to false if you juste want SaR to be used. If both are set to false, the default one (SaR) will be used-->
+      </parameter>
+      <parameter name="sought.fpr.in.percentage">
+        <value class="double">1.0</value>
+      </parameter>
+    </parameters>
+  </filter.FPR.Seeker>
 </code>

IRMa