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To install IRMa you only have to unzip IRMa-<version>.zip file on your local system. Under the main directory, the following structure will ne available : | To install IRMa you only have to unzip IRMa-<version>.zip file on your local system. Under the main directory, the following structure will ne available : | ||
<code> | <code> | ||
- | > auto : directiry containing script samples for the automatique or batch mode. | + | > auto : directory containing script samples for the automatic or batch mode. |
- | > db : Identification database creation script. Migration scripts for //old// identification databases will also be stored here. They will allow user to use existing databases with the new DB model needed for new IRMa version. | + | > db : SQL scripts to create an identification database or to migrate an existing one. |
+ | If the data model has been modified, the provided script will permit data recovery from an //old// identification databases | ||
> lib : libs and dll needed by IRMa | > lib : libs and dll needed by IRMa | ||
- | > VBscripts: Visual Basic scripts used to launch IRMa from Mascot Daemon. IRMa will be executed in automatique mode. | + | > VBscripts: Visual Basic scripts used to launch IRMa from Mascot Daemon. IRMa will be executed in automatic mode. |
- | > IRMa-<version>.jar : IRMa librairy specific code | + | > IRMa-<version>.jar : IRMa library specific code |
> *.bat : batch to run IRMa in specific mode. See following sections. | > *.bat : batch to run IRMa in specific mode. See following sections. | ||
</code> | </code> | ||
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__Note__ \\ | __Note__ \\ | ||
- | To validate //big// Mascot idenitification, it is possible to increase memory used by the application: | + | To validate //big// Mascot identification, it is possible to increase memory used by the application: |
- | Edit ''run.bat'' file and change the ''value'' parameter in ''-Xmx<value>m'' attribute. This value correspond to the amount of memory which will be allocated to IRMa, in Mo. Be carreful to not | + | Edit ''run.bat'' file and change the ''value'' parameter in ''-Xmx<value>m'' attribute. This value correspond to the amount of memory which will be allocated to IRMa, in Mo. Be careful to not specify a value equal (or upper!) to your PC memory full capacity ! |
- | Il est possible de modifier la mémoire occupée par IRMa. Pour cela il faut éditer le fichier run.bat et modifier le paramètre -Xmx<valeur>m. La valeur correspondant à la taille mémoire maximale allouée à IRMa en Mo. Attention cette valeur ne doit pas être équivalente (ou supérieur) à la taille disponible sur l'ordinateur. | + | |
==== Batch mode ==== | ==== Batch mode ==== | ||
- | Pour cela exécuter le fichier //runBatch.bat//. \\ | + | Run batch file //runBatch.bat//. \\ |
- | Le mode batch permet d'enchainer un ensemble d'opérations de façon automatique, et cela sur un ensemble d'identification Mascot ou de projets IRMa préalablement sauvegardés. | + | This mode allow to execute a set of operations, in a automatic manner, on a set of Mascot identification results or on previously saved IRMa projects. |
+ | Operations to be executed can be uploaded from a script file or can be edited in IRMa Batch interface. | ||
- | La description complète de la configuration d'[[batchUserGuide|IRMa Batch]] | + | A complete description of the use and configuration of [[batchUserGuide|IRMa Batch]] is available. |
==== Automatic mode ===== | ==== Automatic mode ===== | ||
- | **Attention** le fichier //runBatch.bat// est un exemple d'utilisation. | + | **Attention** //runBatch.bat// file is only a example of how to run IRMa in this mode. |
- | Le mode auto permet d'enchainer un ensemble d'opérations, décrit dans un fichier de script équivalent à celui utilisé pour le mode [[batchUserGuide|batch]], sur une identification donnée. Ce mode n'a donc aucune interface utilisateur. | + | The automatic mode allow to execute a set of operations, defined in a script file, on a specific Mascot identification result. The script file is the same as the one used in batch mode. See [[batchUserGuide|IRMa Batch]] documentation. This mode has no user interface. |