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firststeps [2009/03/05 15:51] 132.168.73.124 |
firststeps [2009/03/05 15:56] 132.168.73.124 |
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* Report top (absolute or auto) : select Auto with p value < 0.05 | * Report top (absolute or auto) : select Auto with p value < 0.05 | ||
* peptides cut-off : score = 20 | * peptides cut-off : score = 20 | ||
- | * subsets threashold = 1, to consider all sub sets | + | * subsets threshold = 1, to consider all sub sets |
* Parser Properties | * Parser Properties | ||
* Select "Never read sequence" (The result has been generated on our mascot server, so it sequence can't be retrieve in this case !) | * Select "Never read sequence" (The result has been generated on our mascot server, so it sequence can't be retrieve in this case !) | ||
- | {{ parser_settings.png | Parser settings}} | + | {{ parser_settings.png?300 | Parser settings}} |
===== Step 3 : Filter results ===== | ===== Step 3 : Filter results ===== | ||
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* rank threshold = 1 | * rank threshold = 1 | ||
+ | {{ filter_settings.png?300 | Filter settings}} | ||
- | ===== Step 4 : Browse result ===== | + | ===== Step 4 : Result validation ===== |
From Protein Centric Navigation Panel, you can select any identified protein hit to view its property (see User Guide Description...FIXME) | From Protein Centric Navigation Panel, you can select any identified protein hit to view its property (see User Guide Description...FIXME) | ||
- | |||
- | ===== Step 5 : Result curation ===== | ||
They can be identified in the Protein Centric Navigation Panel, they are grayed | They can be identified in the Protein Centric Navigation Panel, they are grayed | ||
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* In Protein Hit Tab, clik on first icon : <IMG> | * In Protein Hit Tab, clik on first icon : <IMG> | ||
- | It is also possible to delete all protein hits with no relevant peptides bu clicking on <IMG_ALL_DEL> in general toolbox. | + | It is also possible to delete all protein hits with no relevant peptides by clicking on <IMG_ALL_DEL> in general toolbox. |
- | ===== Step 6 : Export validated result ===== | + | ===== Step 5 : Export validated result ===== |