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PRIDE Inspector is an application to visualize and perform a first quality assessment of MS data.
With PRIDE Inspector users can have a close look at their own data before the actual submission, or access data already in PRIDE for data mining purposes.
PRIDE Inspector is available at http://code.google.com/p/pride-toolsuite/wiki/PRIDEInspector
File→Open File…
menu and browse to an PRIDE XML file
Peptide unicity in an hEIDI context is based on sequence & calculated mass.
In Pride Inspector, a row exists for each peptide-protein match.
For example, the peptide FASFIDKVR
matches on 15 Protein Groups (15 master proteins) and 7 other proteins.
In hEIDI, this peptide is represented by one peptide node in the Peptide View
.
In Pride Inspector, this peptide appears 22 times: one row for each protein match.
So, the number of peptides in Pride Inspector is generally bigger than the peptide count in a User context.