Differences

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--- userguide:pride_inspector [2012/03/13 17:48]
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+++ userguide:pride_inspector [2012/03/14 12:06] (current)
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@@ Line 15: / Line 15: @@
 ===== FAQ =====
-==== Why do I not have the same number of peptides between hEIDI & Pride Inspector ? ====
+==== Why do I not get the same number of peptides between hEIDI & Pride Inspector ? ====
-Peptide unicity in an hEIDI context is based on sequence & calculated mass.
+{{:userguide:pride_peptidecountinprideinspectorandheidi.png|}}
-In Pride Inspector, a peptide row exists for each peptide matching on a protein
+**Peptide unicity in an hEIDI context is based on sequence & calculated mass.**\\
+For example, the peptide ''FASFIDKVR'' is represented by one peptide node in the ''Peptide View''. \\
+This peptide matches on 15 master proteins (see the ''Protein Group(s) match(es)'' column) but 7 other proteins as well (information not visible in hEIDI)\\
+{{:userguide:pride_onepeptideinheidi.png|}}
+**In Pride Inspector, a row exists for each peptide-protein match.**\\
+For example, the peptide ''FASFIDKVR'' appears 22 times: one row for each protein match.
+{{:userguide:pride_onepeptideinprideinspector.png|}}
+So, the number of peptides in Pride Inspector is generally bigger than the peptide count in a User context.
+===== The Experiment Details tab =====
 {{:userguide:prideinspector_2.png|}}

hEIDI