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start [2016/07/25 11:27]
132.168.72.225
start [2016/08/24 15:35] (current)
132.168.73.77 [Example dataset]
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 **Download** is available at the following FTP site : [[ftp://​ftp.cea.fr/​pub/​edyp/​heidi]] **Download** is available at the following FTP site : [[ftp://​ftp.cea.fr/​pub/​edyp/​heidi]]
  
-The last version of hEIDI, version 1.14.3, is compatible with [[http://​biodev.extra.cea.fr/​docs/​irma|IRMA]] 1.31.1 (could be download ​[[ftp://​ftp.cea.fr/​pub/​edyp/​irma|here]]) ​ and [[http://​biodev.extra.cea.fr/​docs/​irma/​doku.php?​id=msidb|MSIdb Schema version E.2]]  (See //Full Versions// bellow for more information) ​+The last version of hEIDI, version 1.14.3, is compatible with [[http://​biodev.extra.cea.fr/​docs/​irma|IRMA]] 1.31.1 (could be downloaded ​[[ftp://​ftp.cea.fr/​pub/​edyp/​irma|here]]) ​ and [[http://​biodev.extra.cea.fr/​docs/​irma/​doku.php?​id=msidb#​MSI_db_model|MSIdb Schema version E.2]]  (See //Full Versions// bellow for more information) ​
  
-This application helps user go further with identified data. It works on [[http://​biodev.extra.cea.fr/​docs/​irma/​doku.php?​id=msidb|Mass Spectrometry Identification ​database]] (MSIdb) which compiles validated identification ​results and permit experts to do data mining on these results.+hEIDI allows the management, the filtering, the comparison and the export of multiple identification results. It is based on [[http://​biodev.extra.cea.fr/​docs/​irma/​doku.php?​id=msidb|Mass Spectrometry Identification ​databases]] (MSIdb) which compiles validated identification results.
  
 ===== Main Features ===== ===== Main Features =====
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 Here are described the requirements and installation steps needed to use hEIDI. Here are described the requirements and installation steps needed to use hEIDI.
    
-  * Requierement ​ +  * Requirements ​ 
-    * Java version 1.6 or higher must be installed or get the "..-jre.zip" distribution (which embed a JRE)+    * Java version 1.6 or higher must be installed ​(in this case, download hEIDI-1.14.3-part1.zip and hEIDI-1.14.3-part2.zip) ​or get the hEIDI embedded jre (in this case download hEIDI-1.14.3-jre.zip)
     * Postgresql server : Version 8.x or 9.x (See [[http://​biodev.extra.cea.fr/​docs/​irma/​doku.php?​id=msidb#​installing_database|MSIdb]] page)     * Postgresql server : Version 8.x or 9.x (See [[http://​biodev.extra.cea.fr/​docs/​irma/​doku.php?​id=msidb#​installing_database|MSIdb]] page)
     * IRMa      * IRMa 
-      * get last version on [[ftp://​ftp.cea.fr/​pub/​edyp/​irma|FTP]] site+      * get last version ​(1.31.1) ​on the dedicated ​[[ftp://​ftp.cea.fr/​pub/​edyp/​irma|FTP]] site
       * see installation instruction : [[http://​biodev.extra.cea.fr/​docs/​irma/​doku.php?​id=instalguide|IRMa Installation]]       * see installation instruction : [[http://​biodev.extra.cea.fr/​docs/​irma/​doku.php?​id=instalguide|IRMa Installation]]
  
-  * Installation ​Step+  * Installation ​Steps
     - Create a MSIdb on postgresql serveur : [[http://​biodev.extra.cea.fr/​docs/​irma/​doku.php?​id=msidb#​adding_a_msidb|MSIdb]] ​     - Create a MSIdb on postgresql serveur : [[http://​biodev.extra.cea.fr/​docs/​irma/​doku.php?​id=msidb#​adding_a_msidb|MSIdb]] ​
-    - Unzip downloaded hEIDI file. +    - Unzip downloaded hEIDI file. (version 1.14.3) ftp://​ftp.cea.fr/​pub/​edyp/​heidi
     - Run <​Heidi_folder>/​bin/​heidi.exe to launch hEIDI     - Run <​Heidi_folder>/​bin/​heidi.exe to launch hEIDI
  
  
-==== Use cases ====+===== Example dataset ===== 
 + 
 +The ftp folder [[ftp://​ftp.cea.fr/​pub/​edyp/​heidi]] contains a postgresql database dump (AT_CHLORO_EX.backup) that can be used as a test dataset to start with hEIDI. In order to use this database you must first install [[http://​biodev.extra.cea.fr/​docs/​irma/​doku.php?​id=msidb#​installing_database|the postgres server]]. During this installation,​ a default user is created. Once installed : 
 +  -  ​Use the pgAdmin III tool to connect to this database server : right click on the server host (nammed "​localhost"​ if postgres is installed locally on your PC) and click "​Connect"​. Use the password you supplied at the installation step. 
 +  - Select the node nammed "​Databases"​ in the hierarchy, right-click and choose "New Database"​. Choose a database name and let the "​Owner"​ field empty. 
 +  - Select the newly created database, right-click and choose "​Restore"​ in the dropdown menu. In the restore dialog, choose "​Custom or tar" in the "​Format"​ field and let others empty. Do not change default values in "​options"​ tabs and click "​Restore"​ button. When the restoration completes, close the Restore dialog. 
 + 
 +Once the database is restored, follow the [[firstSteps|quick start guide]] steps to connect to this test database with hEIDI.  
 + 
 + 
 +===== how to use hEIDI =====
  
   * Read our [[firstSteps|quick start guide]]. ​   * Read our [[firstSteps|quick start guide]]. ​
start.1469438867.txt.gz · Last modified: 2016/07/25 11:27 by 132.168.72.225