====== How-to export Protein Groups, their peptides and their leaves ======

See also [[how_to:exportadhocexport|]]

===== Run the Export Data feature =====

{{ :how_to:export_adhoc_menu.png|}}
  - From the MSIExplorer view, select the UserContext node to export data from
  - Select ''MS Identifications->Context->Export->Data'' from the main menu bar, to display the ''Export Data'' dialog
  - Select ''Export protein groups with peptides & leaves'' from the top droplist
  - Change default settings if needeed
  - Click the ''OK'' button
  - Select the .csv file to export to 

{{:how_to:export_adhoc_pg_ms_leaves.png|}}

===== Details about resulting .csv file =====

See below for an example of export. Colours have been added for explanations.

  * In red, the protein group (ID, sequence, length, mass, PI, score, coverage, #peptides)
  * In orange, the "direct" peptide(s) in the protein group (ID, sequence, calc mass, exp mass, score, start, stop, elution, #leaves)
  * In yellow, the experimental peptides (i.e. the "leaves"), for each "direct" peptide (ID, sequence, context name, query, search title, sample name)


{{:how_to:export_adhoc_pg_ms_leaves_result.png|}}